Yes, the reading experience is exactly the same.

Is the reading experience the same between the new Comixology app version and the existing Kindle apps?

This toggle only affects purchases made pre-launch. However, any purchases made after the Amazon & Comixology Team-Up launch will appear in both apps.

Note: This feature can be turned on and off whenever you like.

Depending on your Comixology library size it may take several minutes for all of your comic books to appear in your Kindle library.

Refresh your library by “pulling down” on your library screen.

Open your Kindle app and select the Library icon at the bottom of the app screen (second icon from the left).

In the “Your Books and Apps” section under “Book Visibility,” change your visibility status by clicking the “Show your Comixology books” button.

To enable/disable this feature visit the Comixology account settings page on Amazon (UK customers click here). Your reading location and bookmarks will be synched automatically once the feature is enabled. You can now sync your Comixology and Kindle library, which will allow you to read your books on either or both apps.

Can I read my Comixology books on my Kindle app?

Kindle paperwhite comixology